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R2601_24964 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_24964" - Autoinducer-binding transcriptional regulator, LuxR family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_24964Autoinducer-binding transcriptional regulator, LuxR family protein (255 aa)    
Predicted Functional Partners:
aroQ
Type II DHQase ; Catalyzes a trans-dehydration via an enolate intermediate (147 aa)
              0.867
R2601_13224
Uncharacterized protein (124 aa)
   
          0.731
R2601_19584
Endonuclease/exonuclease/phosphatase family protein (333 aa)
   
          0.716
R2601_15537
Uncharacterized protein (309 aa)
   
          0.716
R2601_15532
Core-2/I-branching enzyme family protein (566 aa)
   
          0.712
R2601_08591
Uncharacterized protein (177 aa)
   
          0.708
R2601_18960
Uncharacterized protein (132 aa)
   
          0.692
R2601_27171
Uncharacterized protein (336 aa)
   
          0.673
R2601_15567
ABC transporter, permease protein (276 aa)
   
          0.669
R2601_18568
Uncharacterized protein (293 aa)
 
          0.666
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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