STRINGSTRING
R2601_25001 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25001" - Phospholipase, patatin-like family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25001Phospholipase, patatin-like family protein (295 aa)    
Predicted Functional Partners:
R2601_25006
D-beta-hydroxybutyrate dehydrogenase (257 aa)
 
          0.762
R2601_16800
Uncharacterized protein (161 aa)
 
  0.576
R2601_05063
WD domain/cytochrome c family protein (436 aa)
   
 
    0.540
R2601_14750
NADP-dependent malic enzyme (751 aa)
 
        0.528
R2601_12600
Predicted hydrolase or acyltransferase (273 aa)
 
 
  0.521
R2601_17087
Uncharacterized protein (495 aa)
 
 
  0.516
R2601_16785
PA-phosphatase related phosphoesterase (97 aa)
   
  0.497
R2601_18288
AMP-binding protein (541 aa)
 
 
    0.487
R2601_24996
UPF0386 protein R2601_24996 (85 aa)
              0.482
R2601_09887
Oxidoreductase, short chain dehydrogenase/reductase family protein (252 aa)
     
    0.476
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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