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R2601_25006 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25006" - D-beta-hydroxybutyrate dehydrogenase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25006D-beta-hydroxybutyrate dehydrogenase (257 aa)    
Predicted Functional Partners:
R2601_17834
3-oxoadipate CoA-succinyl transferase, alpha subunit (234 aa)
 
  0.903
R2601_20089
3-oxoadipate CoA-transferase, alpha subunit (221 aa)
 
 
  0.885
R2601_06483
3-oxoadipate CoA-transferase subunit A (239 aa)
 
 
  0.885
R2601_20094
Probable 3-oxoadipate coa-transferase subunit b protein (211 aa)
 
 
  0.883
R2601_17839
3-oxoadipate CoA-succinyl transferase, beta subunit (201 aa)
 
 
  0.883
R2601_06488
3-oxoadipate CoA-transferase subunit B (231 aa)
 
 
  0.883
R2601_12308
Butyrate-acetoacetate CoA-transferase (226 aa)
 
 
  0.786
R2601_21737
Hydroxymethylglutaryl-CoA lyase (283 aa)
     
 
    0.786
R2601_03458
Oxidoreductase, short chain dehydrogenase/reductase family protein (78 aa)
   
   
    0.766
R2601_25001
Phospholipase, patatin-like family protein (295 aa)
 
          0.762
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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