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R2601_25021 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25021" - DNA-binding response regulator, LuxR family protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25021DNA-binding response regulator, LuxR family protein (234 aa)    
Predicted Functional Partners:
R2601_25031
Signal transduction histidine kinase (738 aa)
 
  0.966
R2601_23333
Sensory box sensor histidine kianse/response regulator (594 aa)
   
  0.934
R2601_04848
Putative sensor histidine kinase protein (749 aa)
 
  0.899
R2601_18553
Enoyl-CoA hydratase/isomerase-3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein (666 aa)
       
  0.889
R2601_17988
Enoyl-CoA hydratase (634 aa)
       
  0.889
R2601_25026
GfdT protein (373 aa)
 
     
  0.870
R2601_21627
Sensor histidine kinase (473 aa)
  0.832
R2601_15105
Sensory box histidine kinase/response regulator (812 aa)
 
  0.782
R2601_18513
Sensor histidine kinase (891 aa)
 
  0.773
R2601_21341
Two component diguanylate cyclase (470 aa)
 
  0.754
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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