STRINGSTRING
R2601_25141 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25141" - Transglycosylase SLT domain protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25141Transglycosylase SLT domain protein (197 aa)    
Predicted Functional Partners:
R2601_11444
Flagellar motor protein (634 aa)
 
          0.701
R2601_15447
DNA polymerase I (935 aa)
     
 
  0.638
R2601_06593
Probable replication protein B (309 aa)
 
   
  0.611
fliG
Flagellar motor switch protein G (354 aa)
 
          0.607
R2601_25136
Uncharacterized protein (382 aa)
              0.586
R2601_21987
Possible flagellar motor switch protein (FliG) (350 aa)
 
          0.579
R2601_14505
H+-transporting two-sector ATPase, alpha/beta subunit (453 aa)
 
   
  0.572
R2601_00420
Flagellar hook protein FlgE (433 aa)
 
          0.568
R2601_10629
Rod shape-determining protein MreC (302 aa)
 
 
 
  0.560
R2601_00310
Flagellum-specific ATP synthase (418 aa)
 
   
  0.556
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]