STRINGSTRING
R2601_25161 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25161" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25161Uncharacterized protein (104 aa)    
Predicted Functional Partners:
R2601_25176
Uncharacterized protein (353 aa)
 
          0.945
R2601_25166
Uncharacterized protein (307 aa)
 
          0.917
R2601_25201
Uncharacterized protein (224 aa)
 
          0.872
R2601_23298
Uncharacterized metal-binding protein (678 aa)
 
          0.872
R2601_25191
Corrinoid methyltransferase protein, putative (234 aa)
 
          0.851
R2601_25571
Trimethylamine methyltransferase family protein (514 aa)
 
          0.789
R2601_01633
Trimethylamine methyltransferase MttB-like protein (490 aa)
 
          0.788
R2601_25181
Methionine synthase I (337 aa)
 
          0.756
R2601_25171
HAD-superfamily hydrolase (220 aa)
              0.698
R2601_19317
Dihydroneopterin aldolase, putative (303 aa)
   
          0.697
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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