STRINGSTRING
R2601_25246 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25246" - Competence protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25246Competence protein (678 aa)    
Predicted Functional Partners:
R2601_25251
Glutamyl-tRNA synthetase ; Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction- glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) (468 aa)
   
        0.801
R2601_17819
DNA processing protein DprA, putative (375 aa)
 
   
  0.794
R2601_09952
Competence protein ComM (504 aa)
   
   
  0.761
R2601_14885
Competence protein F (241 aa)
 
   
  0.732
R2601_14105
DNA repair protein RadC (253 aa)
 
   
  0.703
R2601_25256
Citrate synthase (432 aa)
         
  0.677
R2601_14945
ATP-dependent DNA helicase, UvrD/Rep family protein (1125 aa)
   
          0.604
R2601_07543
DNA repair protein RadC (168 aa)
 
   
  0.559
ksgA
S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (278 aa)
 
          0.544
R2601_13634
Uncharacterized protein (291 aa)
   
          0.544
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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