STRINGSTRING
R2601_25446 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25446" - Endonuclease/exonuclease/phosphatase family protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25446Endonuclease/exonuclease/phosphatase family protein (295 aa)    
Predicted Functional Partners:
mfd
Transcription-repair-coupling factor ; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site (1158 aa)
              0.728
R2601_15792
Phage integrase (347 aa)
   
          0.722
R2601_17993
Putative orphan protein putative membrane protein (281 aa)
   
          0.653
R2601_07733
Uncharacterized protein (177 aa)
   
          0.624
R2601_11494
Predicted membrane protein (401 aa)
   
          0.584
R2601_07698
Uncharacterized protein (234 aa)
   
          0.573
R2601_15885
Uncharacterized protein (295 aa)
   
          0.572
R2601_00620
Uncharacterized protein (337 aa)
   
          0.568
R2601_11459
Uncharacterized protein (309 aa)
   
          0.546
R2601_18018
Uncharacterized protein (255 aa)
   
          0.501
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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