STRINGSTRING
R2601_25476 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25476" - Usg, putative in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25476Usg, putative (89 aa)    
Predicted Functional Partners:
R2601_17599
Uncharacterized protein (225 aa)
   
          0.722
R2601_26241
Lipoprotein, putative (202 aa)
   
          0.614
R2601_11274
Uncharacterized protein (223 aa)
   
          0.614
R2601_21306
Uncharacterized protein (156 aa)
   
          0.603
R2601_18403
Lipoprotein, putative (218 aa)
   
          0.595
R2601_09777
Lipoprotein, putative (226 aa)
   
          0.593
R2601_10799
Uncharacterized protein (106 aa)
   
          0.547
R2601_19070
Uncharacterized protein (79 aa)
   
          0.545
R2601_19437
Uncharacterized protein (165 aa)
   
          0.542
gyrA
DNA gyrase subunit A ; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (905 aa)
              0.516
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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