STRINGSTRING
R2601_25516 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25516" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25516Uncharacterized protein (190 aa)    
Predicted Functional Partners:
R2601_25511
Uncharacterized protein (246 aa)
 
          0.969
R2601_25506
UPF0276 protein R2601_25506 (283 aa)
 
          0.945
R2601_25501
Uncharacterized protein (103 aa)
 
          0.911
R2601_27061
RDD family protein (149 aa)
   
          0.694
R2601_27161
Uncharacterized protein (236 aa)
   
          0.686
R2601_12418
MOSC domain protein (199 aa)
   
          0.664
R2601_18493
Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein (448 aa)
   
          0.651
R2601_19295
Uncharacterized protein (55 aa)
   
          0.643
R2601_11149
Response regulator (122 aa)
   
          0.636
R2601_09772
Uncharacterized protein (216 aa)
   
          0.631
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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