STRINGSTRING
R2601_25546 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25546" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25546Uncharacterized protein (263 aa)    
Predicted Functional Partners:
R2601_25551
Uncharacterized protein (408 aa)
 
     
  0.976
R2601_25436
Glycosidase (577 aa)
 
        0.875
R2601_25556
KDPG/KHG bifunctional aldolase (215 aa)
              0.628
R2601_04743
Mannose-6-phosphate isomerase, type II (477 aa)
 
     
  0.540
R2601_25541
Uncharacterized protein (171 aa)
              0.520
R2601_25516
Uncharacterized protein (190 aa)
   
          0.482
R2601_24654
Probable alpha-glucosidase protein (551 aa)
   
        0.462
R2601_25446
Endonuclease/exonuclease/phosphatase family protein (295 aa)
   
          0.459
R2601_19295
Uncharacterized protein (55 aa)
   
          0.459
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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