STRINGSTRING
R2601_25561 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25561" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25561Uncharacterized protein (355 aa)    
Predicted Functional Partners:
R2601_08416
Uncharacterized protein (210 aa)
   
          0.765
R2601_08436
Major tail protein, TP901-1 family (140 aa)
   
          0.760
R2601_16977
Uncharacterized protein (296 aa)
   
          0.757
R2601_24884
Uncharacterized protein (235 aa)
   
          0.756
R2601_08411
Uncharacterized protein (293 aa)
   
          0.753
R2601_08471
Portal protein, HK97 family (399 aa)
   
          0.751
R2601_08461
Phage prohead protease, HK97 family protein (180 aa)
   
          0.735
R2601_25456
Uncharacterized protein (173 aa)
   
          0.723
R2601_08431
Uncharacterized protein (106 aa)
   
          0.720
R2601_08401
Uncharacterized protein (1301 aa)
   
          0.713
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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