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R2601_25571 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25571" - Trimethylamine methyltransferase family protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25571Trimethylamine methyltransferase family protein (514 aa)    
Predicted Functional Partners:
R2601_25191
Corrinoid methyltransferase protein, putative (234 aa)
 
   
  0.895
R2601_16630
2,4-dienoyl-CoA reductase (669 aa)
       
    0.812
R2601_01613
2,4-dienoyl-CoA reductase (NADPH) protein (678 aa)
       
    0.812
R2601_25201
Uncharacterized protein (224 aa)
 
          0.789
R2601_25161
Uncharacterized protein (104 aa)
 
          0.789
R2601_23298
Uncharacterized metal-binding protein (678 aa)
 
          0.787
R2601_17202
Uncharacterized protein (227 aa)
 
          0.778
R2601_25176
Uncharacterized protein (353 aa)
 
          0.778
R2601_18945
DNA-binding protein, putative (131 aa)
   
          0.625
R2601_25181
Methionine synthase I (337 aa)
 
          0.609
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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