STRINGSTRING
R2601_25586 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25586" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25586Uncharacterized protein (211 aa)    
Predicted Functional Partners:
R2601_25581
Uncharacterized protein (127 aa)
 
       
0.556
R2601_25591
Uncharacterized protein (59 aa)
              0.545
R2601_11424
Transcriptional regulator, LuxR family protein (267 aa)
   
          0.500
R2601_15817
No annotation available (445 aa)
   
          0.477
R2601_07588
Transposase (445 aa)
   
          0.477
R2601_19010
Putative insertion sequence ATP-binding protein (690 aa)
   
          0.462
R2601_15910
No annotation available (690 aa)
   
          0.462
guaA
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (521 aa)
              0.455
R2601_13359
Sensor histidine kinase (480 aa)
   
          0.425
R2601_01380
No annotation available (492 aa)
   
          0.417
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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