STRINGSTRING
R2601_25611 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25611" - Outer membrane transporter, OMPP1/FadL/TodX family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25611Outer membrane transporter, OMPP1/FadL/TodX family protein (384 aa)    
Predicted Functional Partners:
R2601_26581
Uncharacterized protein (53 aa)
   
          0.675
R2601_19594
Uncharacterized protein (128 aa)
 
          0.671
R2601_18508
Uncharacterized protein (101 aa)
   
          0.632
R2601_25601
Uncharacterized protein (90 aa)
 
          0.612
R2601_25606
Uncharacterized protein (284 aa)
              0.584
R2601_13759
Uncharacterized protein (88 aa)
   
          0.565
R2601_25616
Uncharacterized protein (285 aa)
              0.560
R2601_10117
Transglycosylase SLT domain protein (158 aa)
   
 
      0.530
R2601_17844
Phasin, PhaP (219 aa)
   
          0.494
R2601_15885
Uncharacterized protein (295 aa)
   
          0.494
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (14%) [HD]