STRINGSTRING
R2601_25616 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25616" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25616Uncharacterized protein (285 aa)    
Predicted Functional Partners:
metA
Homoserine O-transsuccinylase (317 aa)
 
          0.799
R2601_08686
Uncharacterized protein (116 aa)
   
          0.697
R2601_16977
Uncharacterized protein (296 aa)
   
          0.691
R2601_05648
ABC transporter, permease protein, HisMQ family (293 aa)
   
          0.684
R2601_17082
Rhomboid family protein (228 aa)
   
          0.664
R2601_25626
Predicted hydrolase or acyltransferase (Alpha/beta hydrolase) (316 aa)
              0.648
R2601_24514
Acyl carrier protein, putative (80 aa)
   
          0.635
R2601_17629
Uncharacterized protein (109 aa)
   
          0.616
R2601_16570
Uncharacterized protein (216 aa)
   
          0.592
R2601_08026
Uncharacterized protein (178 aa)
   
          0.583
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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