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R2601_25636 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25636" - Transcriptional regulator, TetR family protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25636Transcriptional regulator, TetR family protein (204 aa)    
Predicted Functional Partners:
R2601_25631
Polyphosphate kinase 2, putative (289 aa)
              0.888
R2601_27056
Uncharacterized protein (148 aa)
 
          0.834
metA
Homoserine O-transsuccinylase (317 aa)
              0.766
R2601_25626
Predicted hydrolase or acyltransferase (Alpha/beta hydrolase) (316 aa)
              0.722
R2601_25456
Uncharacterized protein (173 aa)
   
          0.592
R2601_25561
Uncharacterized protein (355 aa)
   
          0.575
R2601_25616
Uncharacterized protein (285 aa)
              0.533
R2601_16977
Uncharacterized protein (296 aa)
   
          0.486
R2601_16845
Uncharacterized protein (271 aa)
   
          0.473
R2601_17844
Phasin, PhaP (219 aa)
   
          0.461
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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