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R2601_25746 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25746" - DNA-damage-inducible protein F in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25746DNA-damage-inducible protein F (449 aa)    
Predicted Functional Partners:
R2601_25741
NADPH-dependent FMN reductase (181 aa)
              0.748
R2601_25756
Thioesterase family protein (141 aa)
              0.729
R2601_25751
Thioesterase family protein (169 aa)
              0.729
R2601_08756
PhoH family protein (326 aa)
       
      0.586
R2601_25761
Transcriptional regulator, MerR family protein (123 aa)
         
  0.503
infB
Translation initiation factor IF-2 ; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (822 aa)
   
        0.462
rbfA
Ribosome-binding factor A ; Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5’-terminal helix region of 16S rRNA (131 aa)
   
        0.462
R2601_15205
Phosphopantetheinyl transferase PptA, putative (218 aa)
              0.451
R2601_11329
Uncharacterized protein (202 aa)
 
   
  0.427
R2601_22472
Acyltransferase, putative (274 aa)
     
    0.424
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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