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R2601_25816 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25816" - LysM domain/M23/M37 peptidase in Pelagibaca bermudensis
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
R2601_25816LysM domain/M23/M37 peptidase (410 aa)    
Predicted Functional Partners:
pcm
Protein-beta-aspartate methyltransferase ; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins (214 aa)
         
  0.776
surE
Nucleoside 5’-monophosphate phosphohydrolase ; Nucleotidase that shows phosphatase activity on nucleoside 5’-monophosphates (261 aa)
   
   
  0.773
R2601_07198
Membrane protein (457 aa)
 
          0.685
R2601_25081
Zinc metalloprotease (447 aa)
 
 
 
  0.631
R2601_08026
Uncharacterized protein (178 aa)
   
          0.594
R2601_14220
Carboxyl-terminal protease family protein (448 aa)
   
 
  0.560
ispDF
Bifunctional enzyme IspD/IspF ; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) (378 aa)
              0.554
R2601_26051
Beta-N-acetylhexosaminidase (335 aa)
 
   
  0.548
R2601_21121
Putative FtsL (114 aa)
   
          0.530
atpH
F-type ATPase subunit delta ; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (186 aa)
     
      0.520
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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