STRINGSTRING
R2601_25871 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25871" - DNA-binding protein, putative in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25871DNA-binding protein, putative (130 aa)    
Predicted Functional Partners:
R2601_14490
Flagellar protein FlaF, putative (125 aa)
   
          0.494
R2601_13990
Uncharacterized protein (249 aa)
   
          0.462
rplI
50S ribosomal protein L9 ; Binds to the 23S rRNA (206 aa)
              0.450
R2601_10102
HAD-superfamily subfamily IIA hydrolase, TIGR01459 (290 aa)
   
          0.442
rpsR
30S ribosomal protein S18 ; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (75 aa)
              0.438
R2601_10574
FixH protein, putative (153 aa)
   
          0.426
lpxK
Lipid A 4’-kinase ; Transfers the gamma-phosphate of ATP to the 4’-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4’-bis-phosphate (lipid IVA) (329 aa)
   
          0.408
R2601_11629
Uncharacterized protein (60 aa)
   
          0.404
rpsF
30S ribosomal protein S6 ; Binds together with S18 to 16S ribosomal RNA (118 aa)
              0.401
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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