STRINGSTRING
R2601_25971 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25971" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25971Uncharacterized protein (787 aa)    
Predicted Functional Partners:
R2601_25976
Methyltransferase, FkbM family protein (231 aa)
 
          0.968
R2601_25961
Uncharacterized protein (273 aa)
 
       
0.893
R2601_25981
Glycosyl transferase, group 2 family protein (350 aa)
 
       
0.885
R2601_14345
Oxidoreductase, Gfo/Idh/MocA family protein (699 aa)
 
 
  0.881
R2601_25956
Uncharacterized protein (70 aa)
 
       
0.878
R2601_25966
Uncharacterized protein (211 aa)
              0.863
R2601_04743
Mannose-6-phosphate isomerase, type II (477 aa)
   
 
  0.840
R2601_25986
Uncharacterized protein (322 aa)
          0.788
R2601_14955
Nucleotidyltransferase family protein (226 aa)
   
  0.782
R2601_12488
Uncharacterized protein (423 aa)
 
  0.738
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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