STRINGSTRING
R2601_25996 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25996" - Lipoprotein, SmpA/OmlA family in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25996Lipoprotein, SmpA/OmlA family (139 aa)    
Predicted Functional Partners:
bamD
Outer membrane protein assembly factor BamD ; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (275 aa)
   
 
  0.937
bamA
Outer membrane protein assembly factor BamA ; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (756 aa)
   
 
 
  0.927
R2601_26316
PQQ enzyme repeat family protein (443 aa)
   
 
 
  0.918
R2601_25991
Putative hemolysin (256 aa)
              0.841
R2601_26001
Uncharacterized protein (193 aa)
 
          0.735
R2601_16750
Uncharacterized protein (173 aa)
   
          0.712
R2601_16900
Uncharacterized protein (166 aa)
   
          0.709
R2601_23288
Disulfide bond formation protein, DsbB family (157 aa)
   
 
      0.706
R2601_09250
Uncharacterized protein (81 aa)
   
          0.699
fabH
Beta-ketoacyl-ACP synthase III ; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and/or straight-chain of fatty acids (323 aa)
              0.631
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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