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R2601_26031 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_26031" - 2'-deoxycytidine 5'-triphosphate deaminase in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_260312’-deoxycytidine 5’-triphosphate deaminase (358 aa)    
Predicted Functional Partners:
R2601_24355
DNA polymerase III subunit chi (152 aa)
   
 
    0.863
R2601_15447
DNA polymerase I (935 aa)
       
  0.835
R2601_24789
Ribonucleotide-diphosphate reductase alpha subunit (1215 aa)
 
   
  0.816
R2601_19599
DNA polymerase III subunit delta (372 aa)
   
 
    0.797
R2601_09932
Deoxyuridine 5’-triphosphate nucleotidohydrolase ; This enzyme is involved in nucleotide metabolism- it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA (145 aa)
       
  0.789
R2601_17304
DNA polymerase III subunits gamma and tau (588 aa)
     
 
    0.786
rpoB
Transcriptase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1378 aa)
         
  0.786
rpoZ
Transcriptase subunit omega ; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (117 aa)
   
 
    0.786
R2601_14420
DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (372 aa)
     
 
    0.786
R2601_12473
Uncharacterized protein (342 aa)
     
 
    0.786
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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