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R2601_26126 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_26126" - Transcriptional regulator, Crp-Fnr family protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
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Textmining
[Homology]
Score
R2601_26126Transcriptional regulator, Crp-Fnr family protein (217 aa)    
Predicted Functional Partners:
rpoD
Sigma-70 ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (661 aa)
       
  0.758
R2601_09947
RNA polymerase sigma factor (292 aa)
       
  0.758
rpoH
RNA polymerase sigma-32 factor (298 aa)
       
  0.758
R2601_00375
RNA polymerase sigma factor protein (Sigma-70) (249 aa)
       
  0.758
rpoA
Transcriptase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (338 aa)
     
 
  0.733
rpoZ
Transcriptase subunit omega ; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (117 aa)
       
 
  0.713
R2601_23333
Sensory box sensor histidine kianse/response regulator (594 aa)
   
 
  0.675
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1418 aa)
     
 
  0.662
R2601_26121
3-hydroxyisobutyrate dehydrogenase (290 aa)
              0.656
R2601_22057
Serine/Threonine protein kinase (707 aa)
     
  0.644
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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