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hfq protein (Pelagibaca bermudensis) - STRING interaction network
"hfq" - RNA-binding protein Hfq in Pelagibaca bermudensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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hfqRNA-binding protein Hfq ; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs (79 aa)    
Predicted Functional Partners:
hflX
GTP-binding protein HflX ; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis (417 aa)
 
   
  0.926
rpsR
30S ribosomal protein S18 ; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (75 aa)
 
 
 
  0.900
rpsT
30S ribosomal protein S20 ; Binds directly to 16S ribosomal RNA (87 aa)
         
  0.867
rho
ATP-dependent helicase Rho ; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho’s RNA-dependent ATPase activity, and release of the mRNA from the DNA template (423 aa)
     
 
  0.862
rpsF
30S ribosomal protein S6 ; Binds together with S18 to 16S ribosomal RNA (118 aa)
     
 
  0.859
R2601_22611
General stress protein CTC ; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance (178 aa)
   
     
  0.856
rpsD
30S ribosomal protein S4 ; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (206 aa)
       
 
  0.851
rplX
50S ribosomal protein L24 ; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit (103 aa)
       
 
  0.848
rpsP
30S ribosomal protein S16 (124 aa)
       
 
  0.847
rpmG
50S ribosomal protein L33 (55 aa)
 
   
  0.846
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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