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R2601_26236 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_26236" - Trk system potassium uptake protein TrkA in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_26236Trk system potassium uptake protein TrkA (458 aa)    
Predicted Functional Partners:
R2601_26231
Trk system potassium uptake protein TrkH (504 aa)
 
 
  0.993
R2601_08888
Trk system potassium uptake protein ; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA (482 aa)
 
 
  0.976
R2601_15522
PTS IIA-like nitrogen-regulatory protein PtsN (154 aa)
       
 
  0.814
R2601_25111
Na+-transporting ATP synthase (451 aa)
   
 
  0.803
R2601_26246
Nitrogen assimilation regulatory protein NtrX (472 aa)
              0.701
hfq
RNA-binding protein Hfq ; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs (79 aa)
         
  0.690
R2601_26251
Nitrogen regulation protein ntrY (740 aa)
              0.686
ispDF
Bifunctional enzyme IspD/IspF ; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) (378 aa)
   
        0.684
hflX
GTP-binding protein HflX ; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis (417 aa)
              0.673
R2601_08616
Ribosomal RNA small subunit methyltransferase B, putative (420 aa)
   
        0.662
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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