STRINGSTRING
R2601_26316 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_26316" - PQQ enzyme repeat family protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_26316PQQ enzyme repeat family protein (443 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly factor BamA ; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (756 aa)
   
  0.990
bamD
Outer membrane protein assembly factor BamD ; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (275 aa)
 
  0.989
R2601_25996
Lipoprotein, SmpA/OmlA family (139 aa)
   
 
 
  0.918
R2601_12990
Glutamate synthase, large subunit (1537 aa)
   
     
  0.851
R2601_24330
Peptidylprolyl isomerase (408 aa)
   
 
  0.835
der
GTP-binding protein EngA ; GTPase that plays an essential role in the late steps of ribosome biogenesis (487 aa)
   
 
  0.810
R2601_26321
Uncharacterized protein (218 aa)
              0.752
R2601_19235
Uncharacterized protein (232 aa)
   
          0.678
R2601_24744
Uncharacterized protein (615 aa)
   
 
  0.651
R2601_14945
ATP-dependent DNA helicase, UvrD/Rep family protein (1125 aa)
   
     
  0.643
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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