STRINGSTRING
R2601_26376 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_26376" - Outer membrane protein, OmpA/MotB family in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_26376Outer membrane protein, OmpA/MotB family (674 aa)    
Predicted Functional Partners:
tolB
Protein TolB ; Involved in the TonB-independent uptake of proteins (446 aa)
   
 
  0.809
R2601_21221
Uncharacterized protein (249 aa)
   
          0.716
R2601_18058
F-ATPase subunit beta ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (463 aa)
   
 
    0.685
R2601_13970
F-ATPase subunit beta ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (474 aa)
   
 
    0.685
R2601_11976
F0F1 ATP synthase subunit beta (117 aa)
   
 
    0.685
guaA
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (521 aa)
   
 
    0.647
R2601_09295
Uncharacterized protein (151 aa)
   
          0.638
R2601_09305
Periplasmic serine protease, DO/DeqQ family protein (462 aa)
   
 
  0.623
R2601_06903
Replication initiator RepC (404 aa)
   
          0.616
R2601_21336
Uncharacterized protein (165 aa)
   
          0.602
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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