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R2601_26381 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_26381" - VWA domain containing CoxE-like family protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_26381VWA domain containing CoxE-like family protein (416 aa)    
Predicted Functional Partners:
R2601_26426
Carbon monoxide dehydrogenase, large subunit (489 aa)
 
 
    0.942
R2601_26416
Carbon monoxide dehydrogenase, medium subunit, putative (262 aa)
 
 
    0.942
R2601_08843
Xanthine dehydrogenase family protein, large subunit (763 aa)
 
 
    0.941
R2601_25951
Uncharacterized protein (302 aa)
 
   
    0.940
R2601_26436
Carbon monoxide dehydrogenase operon G protein (177 aa)
 
 
    0.935
R2601_26421
Carbon monoxide dehydrogenase, large subunit (315 aa)
 
 
    0.919
R2601_21957
Xanthine dehydrogenase family protein, small/large subunits (905 aa)
   
 
    0.914
R2601_01235
Probable carbon monoxide dehydrogenase medium chain (277 aa)
 
 
    0.880
R2601_01225
Probable carbon monoxide dehydrogenase large chain (793 aa)
 
 
    0.868
R2601_22337
Molybdopterin biosynthesis protein (329 aa)
 
          0.855
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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