STRINGSTRING
R2601_26616 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_26616" - RNA polymerase sigma-70 factor in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_26616RNA polymerase sigma-70 factor (184 aa)    
Predicted Functional Partners:
R2601_26626
Two-component response regulator (266 aa)
 
     
  0.947
R2601_26611
Periplasmic sensor signal transduction histidine kinase (594 aa)
 
          0.928
R2601_26621
Uncharacterized protein (56 aa)
              0.859
R2601_21326
RNA polymerase sigma-70 factor (194 aa)
   
          0.699
R2601_26606
Uncharacterized protein (323 aa)
              0.657
R2601_26601
Glutamine amidotransferase-like protein (244 aa)
              0.657
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1418 aa)
   
 
 
  0.621
R2601_23333
Sensory box sensor histidine kianse/response regulator (594 aa)
     
 
  0.551
R2601_12740
Sensory box histidine kinase/response regulator (626 aa)
   
 
 
  0.529
R2601_09305
Periplasmic serine protease, DO/DeqQ family protein (462 aa)
   
   
  0.518
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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