STRINGSTRING
R2601_26641 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_26641" - TRAP dicarboxylate transporter, DctM subunit, putative in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_26641TRAP dicarboxylate transporter, DctM subunit, putative (465 aa)    
Predicted Functional Partners:
R2601_26651
TRAP dicarboxylate transporter, DctP subunit (346 aa)
 
   
    0.994
R2601_26646
TRAP dicarboxylate transporter, DctQ subunit (190 aa)
 
   
    0.983
R2601_26706
TRAP transporter, 4TM/12TM fusion protein (875 aa)
         
    0.914
R2601_26701
TRAP transporter solute receptor, TAXI family protein (321 aa)
         
    0.900
R2601_20386
TRAP-type C4-dicarboxylate transport system, periplasmic component (348 aa)
 
 
  0.824
R2601_03393
Possible TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein (369 aa)
 
 
  0.801
R2601_23615
Putative extracellular solute-binding protein (336 aa)
 
 
  0.748
R2601_03828
Uncharacterized protein (335 aa)
 
 
  0.727
R2601_17439
Bacterial extracellular solute-binding protein, family 7 (323 aa)
 
 
  0.701
R2601_05353
Uncharacterized protein (333 aa)
 
 
  0.688
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]