STRINGSTRING
R2601_26706 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_26706" - TRAP transporter, 4TM/12TM fusion protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_26706TRAP transporter, 4TM/12TM fusion protein (875 aa)    
Predicted Functional Partners:
R2601_26701
TRAP transporter solute receptor, TAXI family protein (321 aa)
   
    0.998
R2601_26711
Uncharacterized protein (141 aa)
 
          0.952
R2601_00825
TRAP-T family transporter, DctP subunit (315 aa)
   
    0.950
R2601_26641
TRAP dicarboxylate transporter, DctM subunit, putative (465 aa)
         
    0.914
R2601_02418
TRAP-T family transporter, periplasmic substrate binding subunit (320 aa)
 
   
    0.901
R2601_06448
Uncharacterized protein (302 aa)
 
   
    0.901
R2601_26651
TRAP dicarboxylate transporter, DctP subunit (346 aa)
         
    0.900
R2601_20079
Possible TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein (376 aa)
 
          0.690
R2601_06033
TRAP dicarboxylate transporter, DctQ subunit, putative (155 aa)
   
   
    0.560
R2601_26696
Uncharacterized protein (440 aa)
 
          0.558
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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