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R2601_26716 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_26716" - Helix-turn-helix motif in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_26716Helix-turn-helix motif (152 aa)    
Predicted Functional Partners:
R2601_26721
GCN5-related N-acetyltransferase (181 aa)
 
        0.849
R2601_08356
Probable acetyltransferase protein (175 aa)
 
        0.835
R2601_14360
NAD(+) synthase (552 aa)
       
  0.824
R2601_08361
Putative DNA-binding protein (184 aa)
   
          0.777
R2601_05983
HipA protein (439 aa)
     
 
  0.736
R2601_26726
Putative inner membrane protein (145 aa)
 
          0.735
R2601_20366
N-carbamyl-D-amino acid amidohydrolase (302 aa)
 
   
    0.547
R2601_20611
Uncharacterized protein (343 aa)
 
          0.534
R2601_07178
Apolipoprotein N-acyltransferase ; Transfers the fatty acyl group on membrane lipoproteins (523 aa)
 
     
  0.518
R2601_02138
Uncharacterized protein (246 aa)
   
   
  0.510
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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