STRINGSTRING
R2601_26776 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_26776" - Transcriptional regulator in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_26776Transcriptional regulator (188 aa)    
Predicted Functional Partners:
R2601_26881
Putative aminotransferase (344 aa)
   
 
  0.734
R2601_25381
Aminotransferase, class V (399 aa)
       
  0.666
R2601_09310
NifS-related protein (416 aa)
       
  0.666
R2601_26771
Uncharacterized protein (547 aa)
              0.663
R2601_24140
Uncharacterized protein (150 aa)
   
   
  0.626
R2601_26761
Cytochrome d oxidase (537 aa)
         
  0.627
R2601_26756
Cytochrome d ubiquinol oxidase, subunit II (387 aa)
              0.619
R2601_19579
DnaJ-like protein DjlA, putative (227 aa)
   
 
  0.595
R2601_22352
Ferredoxin--NADP reductase (292 aa)
 
     
  0.589
R2601_27046
Uncharacterized protein (486 aa)
       
  0.561
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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