STRINGSTRING
R2601_26846 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_26846" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_26846Uncharacterized protein (162 aa)    
Predicted Functional Partners:
R2601_26841
Uncharacterized protein (192 aa)
 
          0.904
R2601_26856
FeS assembly ATPase SufC (251 aa)
              0.887
R2601_26851
FeS assembly protein SufD (425 aa)
              0.887
R2601_26836
Cysteine desulfurase ; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine (406 aa)
              0.887
R2601_26861
Uncharacterized protein (187 aa)
 
          0.783
R2601_26741
Uncharacterized protein (83 aa)
   
          0.771
R2601_17769
Uncharacterized protein (110 aa)
   
          0.764
R2601_17072
Uncharacterized protein (208 aa)
   
          0.758
R2601_24514
Acyl carrier protein, putative (80 aa)
   
          0.729
R2601_21031
Uncharacterized protein (131 aa)
   
          0.724
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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