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R2601_26876 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_26876" - FeS assembly protein SufB in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_26876FeS assembly protein SufB (510 aa)    
Predicted Functional Partners:
R2601_26856
FeS assembly ATPase SufC (251 aa)
  0.999
R2601_26851
FeS assembly protein SufD (425 aa)
 
0.998
R2601_26836
Cysteine desulfurase ; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine (406 aa)
 
  0.995
R2601_05798
Probable aminotransferase (415 aa)
 
  0.982
R2601_23440
Fe-S metabolism associated family protein (135 aa)
 
 
  0.949
R2601_22417
Iron-sulfur cluster assembly accessory protein (126 aa)
   
 
  0.903
R2601_25381
Aminotransferase, class V (399 aa)
 
  0.894
R2601_26881
Putative aminotransferase (344 aa)
       
  0.890
R2601_22432
Uncharacterized protein (118 aa)
 
   
  0.880
R2601_09310
NifS-related protein (416 aa)
 
  0.877
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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