STRINGSTRING
R2601_26941 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_26941" - Peptidase, M23/M37 family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_26941Peptidase, M23/M37 family protein (415 aa)    
Predicted Functional Partners:
R2601_26946
Uncharacterized protein (175 aa)
 
          0.935
R2601_12950
Penicillin-binding protein, 1A family (727 aa)
   
 
  0.749
R2601_21181
Zinc ABC transporter, periplasmic zinc-binding protein (359 aa)
   
   
  0.725
R2601_14220
Carboxyl-terminal protease family protein (448 aa)
 
 
  0.719
R2601_26051
Beta-N-acetylhexosaminidase (335 aa)
 
   
  0.695
R2601_26936
Uncharacterized protein (269 aa)
              0.687
R2601_25081
Zinc metalloprotease (447 aa)
 
 
 
  0.665
R2601_26931
Peroxiredoxin (175 aa)
              0.656
R2601_21547
Penicillin-binding protein 1A (845 aa)
 
 
 
  0.653
R2601_26926
Uncharacterized protein (1097 aa)
 
          0.623
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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