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R2601_27006 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_27006" - Probable spermidineputrescine ABC transporter permease protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_27006Probable spermidineputrescine ABC transporter permease protein (261 aa)    
Predicted Functional Partners:
R2601_27011
Probable spermidineputrescine ABC transporter permease protein (328 aa)
 
  0.999
R2601_27001
Probable spermidineputrescine ABC transporter ATP-binding protein (360 aa)
 
 
  0.999
R2601_27016
Putative ABC transporter periplasmic spermidineputrescine-binding protein (368 aa)
   
    0.994
R2601_11404
Putrescine-binding periplasmic protein ; Required for the activity of the bacterial periplasmic transport system of putrescine (341 aa)
 
  0.951
R2601_11414
ABC putrescine transporter, inner membrane subunit (306 aa)
 
  0.948
R2601_13289
Putrescine ABC transporter, permease protein (296 aa)
 
  0.947
R2601_17539
Uncharacterized protein (285 aa)
 
  0.947
R2601_10132
ABC polyamine/opine transporter, inner membrane subunit (562 aa)
 
  0.943
R2601_11419
Probable ATP-binding component of ABC transporter (355 aa)
 
 
  0.943
R2601_13279
Putrescine-binding periplasmic protein ; Required for the activity of the bacterial periplasmic transport system of putrescine (368 aa)
 
  0.942
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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