STRINGSTRING
R2601_27021 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_27021" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_27021Uncharacterized protein (366 aa)    
Predicted Functional Partners:
R2601_27031
Uncharacterized protein (160 aa)
 
          0.966
R2601_27036
Oxidoreductase (487 aa)
 
          0.959
R2601_27016
Putative ABC transporter periplasmic spermidineputrescine-binding protein (368 aa)
 
          0.926
R2601_27026
Alkyl hydroperoxide reductase AhpD ; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity (195 aa)
 
          0.922
R2601_27041
Probable NreB protein (445 aa)
 
          0.854
R2601_27046
Uncharacterized protein (486 aa)
 
          0.757
R2601_27011
Probable spermidineputrescine ABC transporter permease protein (328 aa)
 
          0.724
R2601_27006
Probable spermidineputrescine ABC transporter permease protein (261 aa)
 
          0.706
R2601_27001
Probable spermidineputrescine ABC transporter ATP-binding protein (360 aa)
 
          0.654
R2601_01005
TRAP dicarboxylate transporter, DctQ subunit (166 aa)
   
          0.547
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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