STRINGSTRING
R2601_27041 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_27041" - Probable NreB protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_27041Probable NreB protein (445 aa)    
Predicted Functional Partners:
R2601_27046
Uncharacterized protein (486 aa)
   
        0.862
R2601_27021
Uncharacterized protein (366 aa)
 
          0.854
R2601_27036
Oxidoreductase (487 aa)
 
        0.798
R2601_27031
Uncharacterized protein (160 aa)
 
          0.791
R2601_27016
Putative ABC transporter periplasmic spermidineputrescine-binding protein (368 aa)
 
          0.774
R2601_27026
Alkyl hydroperoxide reductase AhpD ; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity (195 aa)
 
          0.758
R2601_27051
Transcriptional regulator, AsnC family protein (153 aa)
              0.630
R2601_21957
Xanthine dehydrogenase family protein, small/large subunits (905 aa)
     
      0.547
R2601_26426
Carbon monoxide dehydrogenase, large subunit (489 aa)
     
      0.540
R2601_26421
Carbon monoxide dehydrogenase, large subunit (315 aa)
     
      0.540
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (8%) [HD]