STRINGSTRING
R2601_27046 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_27046" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_27046Uncharacterized protein (486 aa)    
Predicted Functional Partners:
R2601_23440
Fe-S metabolism associated family protein (135 aa)
 
  0.925
R2601_20891
Selenide,water dikinase, putative (720 aa)
   
 
  0.903
R2601_26851
FeS assembly protein SufD (425 aa)
 
  0.872
R2601_26881
Putative aminotransferase (344 aa)
   
 
  0.870
R2601_26876
FeS assembly protein SufB (510 aa)
 
  0.866
R2601_27041
Probable NreB protein (445 aa)
   
        0.862
R2601_27141
Dihydropteroate synthase, DHPS-Homocysteine S-methyltransferase-Cobalamin-dependent methionine (1256 aa)
       
  0.834
R2601_27051
Transcriptional regulator, AsnC family protein (153 aa)
 
          0.827
R2601_26856
FeS assembly ATPase SufC (251 aa)
 
 
  0.791
R2601_26836
Cysteine desulfurase ; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine (406 aa)
   
   
 
0.773
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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