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R2601_27051 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_27051" - Transcriptional regulator, AsnC family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_27051Transcriptional regulator, AsnC family protein (153 aa)    
Predicted Functional Partners:
R2601_12990
Glutamate synthase, large subunit (1537 aa)
   
   
  0.831
R2601_27046
Uncharacterized protein (486 aa)
 
          0.827
R2601_19382
Transcriptional regulator, AsnC family protein (151 aa)
   
          0.769
R2601_18985
Bifunctional protein PutA ; Oxidizes proline to glutamate for use as a carbon and nitrogen source (1142 aa)
   
   
  0.678
pqqE
Pyrroloquinoline quinone biosynthesis protein E (369 aa)
   
 
  0.669
R2601_02838
Uncharacterized protein (278 aa)
   
 
  0.669
R2601_27041
Probable NreB protein (445 aa)
              0.630
R2601_27011
Probable spermidineputrescine ABC transporter permease protein (328 aa)
     
    0.617
R2601_27026
Alkyl hydroperoxide reductase AhpD ; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity (195 aa)
     
      0.596
R2601_27031
Uncharacterized protein (160 aa)
     
      0.592
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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