STRINGSTRING
R2601_27071 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_27071" - Lipoprotein, putative in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_27071Lipoprotein, putative (183 aa)    
Predicted Functional Partners:
R2601_27076
Paraquat-inducible protein, putative (794 aa)
 
          0.972
R2601_27086
Paraquat-inducible protein A (214 aa)
 
          0.962
R2601_27081
Paraquat-inducible protein A (213 aa)
 
          0.962
R2601_26611
Periplasmic sensor signal transduction histidine kinase (594 aa)
   
          0.683
R2601_14795
Uncharacterized protein (246 aa)
   
          0.636
R2601_13649
Uncharacterized protein (115 aa)
   
          0.610
R2601_21807
Uncharacterized protein (140 aa)
   
          0.581
R2601_07821
Cytochrome c family protein (135 aa)
   
          0.578
R2601_18018
Uncharacterized protein (255 aa)
   
          0.567
R2601_15125
Uncharacterized protein (490 aa)
 
          0.566
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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