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R2601_27091 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_27091" - Transcriptional regulator, DeoR family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_27091Transcriptional regulator, DeoR family protein (255 aa)    
Predicted Functional Partners:
R2601_15240
Phosphofructokinase (317 aa)
 
     
  0.694
R2601_15522
PTS IIA-like nitrogen-regulatory protein PtsN (154 aa)
 
     
  0.675
R2601_11059
Thioredoxin (305 aa)
       
      0.653
R2601_00165
Transcriptional regulator, LacI family protein (338 aa)
   
     
  0.569
R2601_27096
Uncharacterized protein (160 aa)
              0.541
R2601_27086
Paraquat-inducible protein A (214 aa)
              0.525
R2601_27081
Paraquat-inducible protein A (213 aa)
              0.525
R2601_27106
ABC transporter, ATP-binding protein (227 aa)
   
        0.513
R2601_27111
Uncharacterized protein (141 aa)
              0.509
R2601_27101
Uncharacterized protein (437 aa)
              0.509
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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