STRINGSTRING
R2601_27111 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_27111" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_27111Uncharacterized protein (141 aa)    
Predicted Functional Partners:
R2601_27101
Uncharacterized protein (437 aa)
 
          0.973
R2601_27106
ABC transporter, ATP-binding protein (227 aa)
 
          0.933
R2601_27116
Alkaline phosphatase family protein (499 aa)
 
          0.917
R2601_27096
Uncharacterized protein (160 aa)
              0.807
R2601_20169
Transcriptional regulator (182 aa)
   
          0.585
R2601_18608
Uncharacterized protein (597 aa)
   
          0.535
R2601_27091
Transcriptional regulator, DeoR family protein (255 aa)
              0.509
R2601_22237
Putative regulatory protein, GntR family (295 aa)
   
          0.464
R2601_21672
Putative malonate transporter, mdcF, AEC family protein (300 aa)
   
          0.440
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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