STRINGSTRING
R2601_27228 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_27228" - MotA/TolQ/ExbB proton channel family protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_27228MotA/TolQ/ExbB proton channel family protein (222 aa)    
Predicted Functional Partners:
R2601_27223
Uncharacterized protein (132 aa)
 
          0.969
R2601_27238
Uncharacterized protein (129 aa)
 
          0.960
R2601_27243
Uncharacterized protein (379 aa)
              0.806
R2601_27233
Uncharacterized protein (118 aa)
              0.780
R2601_05513
Transporter, AcrB/AcrD/AcrF family protein (1016 aa)
   
          0.639
R2601_27263
Putative hemin binding periplasmic transmembrane protein (64 aa)
 
          0.595
R2601_05508
Efflux transporter, RND family, MFP subunit (355 aa)
   
          0.589
lpxK
Lipid A 4’-kinase ; Transfers the gamma-phosphate of ATP to the 4’-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4’-bis-phosphate (lipid IVA) (329 aa)
 
          0.557
R2601_15512
ABC transporter, ATP-binding protein (252 aa)
   
          0.536
R2601_13885
Transporter, AcrB/AcrD/AcrF family protein (1129 aa)
   
          0.502
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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