STRINGSTRING
R2601_27253 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_27253" - Hemin degrading factor in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_27253Hemin degrading factor (351 aa)    
Predicted Functional Partners:
R2601_27258
Putative hemin binding periplasmic transmembrane protein (228 aa)
   
  0.994
hmuV
Hemin import ATP-binding protein HmuV ; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system (262 aa)
 
  0.985
R2601_27268
Permease protein of ABC transporter (359 aa)
 
  0.984
R2601_27263
Putative hemin binding periplasmic transmembrane protein (64 aa)
 
   
  0.982
R2601_27278
Uncharacterized protein (106 aa)
         
  0.815
R2601_15020
Heme acquisition protein hasR (666 aa)
 
   
  0.748
R2601_27238
Uncharacterized protein (129 aa)
 
          0.678
R2601_02053
Probable iron ABC transporter, permease protein (345 aa)
 
  0.668
R2601_27223
Uncharacterized protein (132 aa)
 
     
  0.654
R2601_11906
Uncharacterized protein (102 aa)
   
          0.619
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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