STRINGSTRING
R2601_27374 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_27374" - Putative transposase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_27374Putative transposase (265 aa)    
Predicted Functional Partners:
R2601_19794
Putative transposase (233 aa)
     
  0.845
R2601_19799
Putative transposase (200 aa)
          0.838
R2601_06933
Putative transposase (237 aa)
     
  0.829
R2601_15802
Putative transposase (80 aa)
          0.814
R2601_15807
Transposion helper protein, ATP-binding protein (140 aa)
 
     
  0.745
R2601_24395
Transposion helper protein, ATP-binding protein (255 aa)
     
  0.610
R2601_07493
No annotation available (274 aa)
     
  0.606
R2601_07278
Transposion helper protein, ATP-binding protein (274 aa)
     
  0.606
R2601_07593
Transposase (289 aa)
     
  0.603
R2601_13249
FolC bifunctional protein (425 aa)
       
      0.437
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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