STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ42560.1Taurine catabolism dioxygenase TauD, TfdA family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (351 aa)    
Predicted Functional Partners:
EDZ41194.1
Sulfopyruvate decarboxylase subunit alpha; [R] COG4032 Predicted thiamine-pyrophosphate-binding protein.
   
    0.894
RB2083_66
Metal-dependent phosphohydrolase, HD subdomain; [R] COG4341 Predicted HD phosphohydrolase.
       0.793
EDZ42721.1
Rhodanese domain protein; [P] COG0607 Rhodanese-related sulfurtransferase.
    
 0.684
tauA
Taurine ABC transporter, periplasmic binding protein; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
  
 
 0.681
EDZ44425.1
Luciferase-like monooxygenase family; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.605
EDZ42964.1
phytanoyl-CoA dioxygenase family protein.
  
 
  0.581
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
   
 
  0.581
sdhA
Succinate dehydrogenase, flavoprotein subunit; [H] COG0029 Aspartate oxidase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 
  0.537
EDZ43094.1
3-ketosteroid dehydrogenase, putative; [H] COG0029 Aspartate oxidase.
   
 
  0.537
EDZ43274.1
KR domain family; [Q] COG3321 Polyketide synthase modules and related proteins.
  
  
 0.534
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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