STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ42988.1TPR repeat family protein; [S] COG2938 Uncharacterized conserved protein. (86 aa)    
Predicted Functional Partners:
sdhA
Succinate dehydrogenase, flavoprotein subunit; [H] COG0029 Aspartate oxidase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 0.972
EDZ43094.1
3-ketosteroid dehydrogenase, putative; [H] COG0029 Aspartate oxidase.
  
 0.972
EDZ43135.1
Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.
       0.852
EDZ43582.1
Transcriptional regulator, MarR family; [K] COG1846 Transcriptional regulators.
 
     0.776
aatA
[E] COG0436 Aspartate/tyrosine/aromatic aminotransferase.
    
  0.676
EDZ44301.1
[I] COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
     
 0.654
EDZ44280.1
[I] COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
     
 0.612
EDZ43280.1
Phosphate acetyl/butyryl transferase subfamily, putative; [C] COG0281 Malic enzyme.
    
  0.538
EDZ40918.1
Phosphate acetyl/butyryl transferase subfamily, putative; [C] COG0281 Malic enzyme.
    
  0.538
sdhB
[C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
 
 0.533
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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